Manpreet Katari

Manpreet S. Katari

Clinical Associate Professor of Biology; Coordinator of Computational Studies

Ph.D. 2004 (Genetics), SUNY Stony Brook; B.S. 1997 (Biochemistry), SUNY Buffalo.

Office Address: 

New York University
Department of Biology
1009 Silver Center
100 Washington Square East
New York, NY 10003-6688

Phone: 

(212) 998-8249

Fax: 

(212) 995-4015

Personal Homepage: 

https://sites.google.com/a/nyu.edu/mkatari/

Areas of Research/Interest: 

Bioinformatics, Systems Biology, Functional Genomics, Comparative Genomics.

List of Publications from Pubmed

List of citations from Google Scholar

Fellowships/Honors:

NRSA (NIH) FELLOWSHIP: Networks of nitrogen regulated genes in seed (Sep ’05 - Aug ‘07)

Selected Works:

PubMed Search Results:

TCF7L1 Modulates Colorectal Cancer Growth by Inhibiting Expression of the Tumor-Suppressor Gene EPHB3.
Sci Rep   (2016 Jun 23);  PMC4917863 free full-text archive
Murphy M, Chatterjee SS, Jain S, Katari M, DasGupta R
 
Cross-Species Network Analysis Uncovers Conserved Nitrogen-Regulated Network Modules in Rice.
Plant Physiol   (2015 Aug);  PMC4528727 free full-text archive
Obertello M, Shrivastava S, Katari MS, Coruzzi GM
 
The histone methyltransferase SDG8 mediates the epigenetic modification of light and carbon responsive genes in plants.
Genome Biol   (2015 Apr 19);  PMC4464704 free full-text archive
Li Y, Mukherjee I, Thum KE, Tanurdzic M, Katari MS, Obertello M, Edwards MB, McCombie WR, Martienssen RA, Coruzzi GM
 
Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
BMC Genomics   (2013 Oct 11);  PMC3906980 free full-text archive
Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA
 
Plasticity regulators modulate specific root traits in discrete nitrogen environments.
PLoS Genet   (2013);  PMC3764102 free full-text archive
Gifford ML, Banta JA, Katari MS, Hulsmans J, Chen L, Ristova D, Tranchina D, Purugganan MD, Coruzzi GM, Birnbaum KD
 
A functional phylogenomic view of the seed plants.
PLoS Genet   (2011 Dec);  PMC3240601 free full-text archive
Lee EK, Cibrian-Jaramillo A, Kolokotronis SO, Katari MS, Stamatakis A, Ott M, Chiu JC, Little DP, Stevenson DW, McCombie WR, Martienssen RA, Coruzzi G, Desalle R
 
An international bioinformatics infrastructure to underpin the Arabidopsis community.
Plant Cell   (2010 Aug);  PMC2947164 free full-text archive
International Arabidopsis Informatics Consortium
 
Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis.
BMC Syst Biol   (2010 Aug 12);  PMC2933594 free full-text archive
Obertello M, Krouk G, Katari MS, Runko SJ, Coruzzi GM
 
Using phylogenomic patterns and gene ontology to identify proteins of importance in plant evolution.
Genome Biol Evol   (2010 Jul 12);  PMC2997538 free full-text archive
Cibrian-Jaramillo A, De la Torre-Barcena JE, Lee EK, Katari MS, Little DP, Stevenson DW, Martienssen R, Coruzzi GM, DeSalle R
 
In silico evaluation of predicted regulatory interactions in Arabidopsis thaliana.
BMC Bioinformatics   (2009 Dec 21);  PMC2803859 free full-text archive
Nero D, Katari MS, Kelfer J, Tranchina D, Coruzzi GM
 
VirtualPlant: a software platform to support systems biology research.
Plant Physiol   (2010 Feb);  PMC2815851 free full-text archive
Katari MS, Nowicki SD, Aceituno FF, Nero D, Kelfer J, Thompson LP, Cabello JM, Davidson RS, Goldberg AP, Shasha DE, Coruzzi GM, Gutierrez RA
 
The impact of outgroup choice and missing data on major seed plant phylogenetics using genome-wide EST data.
PLoS One   (2009 Jun 02);  PMC2685480 free full-text archive
de la Torre-Barcena JE, Kolokotronis SO, Lee EK, Stevenson DW, Brenner ED, Katari MS, Coruzzi GM, DeSalle R
 
An integrated genetic, genomic and systems approach defines gene networks regulated by the interaction of light and carbon signaling pathways in Arabidopsis.
BMC Syst Biol   (2008 Apr 04);  PMC2335094 free full-text archive
Thum KE, Shin MJ, Gutierrez RA, Mukherjee I, Katari MS, Nero D, Shasha D, Coruzzi GM
 
Systems approach identifies an organic nitrogen-responsive gene network that is regulated by the master clock control gene CCA1.
Proc Natl Acad Sci U S A   (2008 Mar 25);  PMC2290744 free full-text archive
Gutierrez RA, Stokes TL, Thum K, Xu X, Obertello M, Katari MS, Tanurdzic M, Dean A, Nero DC, McClung CR, Coruzzi GM
 
Sungear: interactive visualization and functional analysis of genomic datasets.
Bioinformatics   (2007 Jan 15);   PMID: 17018536
Poultney CS, Gutierrez RA, Katari MS, Gifford ML, Paley WB, Coruzzi GM, Shasha DE
 
ESTimating plant phylogeny: lessons from partitioning.
BMC Evol Biol   (2006 Jun 15);  PMC1564041 free full-text archive
de la Torre JE, Egan MG, Katari MS, Brenner ED, Stevenson DW, Coruzzi GM, DeSalle R
 
EST analysis in Ginkgo biloba: an assessment of conserved developmental regulators and gymnosperm specific genes.
BMC Genomics   (2005 Oct 15);  PMC1285361 free full-text archive
Brenner ED, Katari MS, Stevenson DW, Rudd SA, Douglas AW, Moss WN, Twigg RW, Runko SJ, Stellari GM, McCombie WR, Coruzzi GM
 
Comparing low coverage random shotgun sequence data from Brassica oleracea and Oryza sativa genome sequence for their ability to add to the annotation of Arabidopsis thaliana.
Genome Res   (2005 Apr);  PMC1074364 free full-text archive
Katari MS, Balija V, Wilson RK, Martienssen RA, McCombie WR
 
Expressed sequence tag analysis in Cycas, the most primitive living seed plant.
Genome Biol   (2003);  PMC329417 free full-text archive
Brenner ED, Stevenson DW, McCombie RW, Katari MS, Rudd SA, Mayer KF, Palenchar PM, Runko SJ, Twigg RW, Dai G, Martienssen RA, Benfey PN, Coruzzi GM
 
Evolution and microsynteny of the apyrase gene family in three legume genomes.
Mol Genet Genomics   (2003 Dec);   PMID: 14598165
Cannon SB, McCombie WR, Sato S, Tabata S, Denny R, Palmer L, Katari M, Young ND, Stacey G
 
Identification of mesoderm development (mesd) candidate genes by comparative mapping and genome sequence analysis.
Genomics   (2001 Feb 15);   PMID: 11247670
Wines ME, Lee L, Katari MS, Zhang L, DeRossi C, Shi Y, Perkins S, Feldman M, McCombie WR, Holdener BC
 
Gangliosides of monocyte-derived macrophages of adults with advanced HIV infection show reduced surface accessibility.
J Leukoc Biol   (1998 Sep);   PMID: 9738657
Berenson CS, Gallery MA, Katari MS, Foster EW, Pattoli MA
 
Updated on 01/04/2017