David Fitch

David H. Fitch

Professor of Biology

Ph.D. 1986 (genetics), Connecticut; B.A. 1980 (biology), Dartmouth College.

Office Address: 

New York University
Department of Biology
1009 Silver Center
100 Washington Square East
New York, NY 10003-6688

Phone: 

(212) 998-8254

Fax: 

(212) 995-4015

Lab Homepage: 

http://www.nyu.edu/projects/fitch/

Areas of Research/Interest: 

Evolution of development, molecular systematics, and developmental genetics of the male tail in nematodes related to C. elegans.

List of Publications from Pubmed

Research

Using the developmental genetic model system Caenorhabditis elegans, we are characterizing genes responsible for morphogenesis, a collection of fundamental developmental mechanisms that shape and organize cells into particular forms. C. elegans is used for this study because it is complex enough to share components and mechanisms of more complex multicellular animals, but is simple enough to be described in complete terms. The structure we are using as a model for morphogenesis is the sexually dimorphic tail tip. This simple feature is constructed of only 4 cells that, in males only, fuse very late in juvenile ("larval") development and change their cellular structure and position. This results in a blunt shape (the pointy shape of the hermaphrodite tail results from lack of morphogenetic change). We've finished a complete transmission electron microscopic reconstruction of these cellular events using serial sections, providing a descriptive foundation for further functional studies. We have isolated several mutations that fail at certain steps of male tail tip morphogenesis, and are currently cloning the genes defined by these mutations to understand their molecular functions.


Figure: Model of the 4tail tip cells in a C. elegans larva (cuticle removed). Click for a larger image.

Evolutionary changes in the development of the tail tip have also occurred. Using molecular phylogenetic analysis in combination with a developmental genetic approach, we are reconstructing the developmental changes that have occurred in male tails during the evolution of family Rhabditidae (of which C. elegans is a member). So far we have found several mutations that closely mimic evolutionary changes, suggesting candidate genes that could have been involved in evolutionary changes. These investigations will provide specific information about the genes and processes conserved in morphogenetic mechanisms as well as insight into the ways that these mechanisms can change to produce variation in multicellular form.

Teaching

Evolution (V23.0058)-Fall term each year,
Principles of Evolution (G23.1069) - Spring term every even year,
Molecular Evolution Journal Club (G23.3018)-Fall term every year.

Participation in the following courses:
Foundations of Developmental Genetics I and II (G23.2130-31), Principles of Biology I (V23.0011), Molecular and Cell Biology II (V23.0022), Molecular Genetics (G23.2127), Advances in Biology (School of Education).

Biographical Sketch

Professor, Department of Biology, New York University, Sept. 1, 2010 - present.

Associate Professor, 1998-2010 Molecular systematics and evolution of morphologenesis in rhabditid nematodes; developmental genetics of tail tip morphology in C. elegans.

Assistant Professor, Department of Biology, New York University, Sept. 1, 1993-98

NIH Postdoctoral Fellow, Department of Molecular Genetics, Albert Einstein College of Medicine, 1990-1993. Developmental genetics and evolution of male morphogenesis in C. elegans and other nematodes (Mentor: Prof. Scott W. Emmons).

Postdoctoral Research Associate, Dept. of Anatomy, Wayne State University School of Medicine, 1986-1989. Molecular evolution of primate ß-like globin genes (Mentor: Prof. Morris Goodman).

Graduate Research Assistant, Department of Molecular and Cell Biology, University of Connecticut, 1981-1986. Comparative molecular genetics of Drosophila histone genes (Mentor: Prof. Linda D. Strausbaugh).

Biologist, Department of Energy Appropriate Alcohol Fuels Technology Grant, 1980-1982. Demonstration project for the bioconversion of waste cellulose into fuel-grade ethanol.

External Affiliations:

Society for Molecular Biology and Evolution, Society of Systematic Biologists, Society for the Study of Evolution.

Fellowships/Honors:

Fulbright Fellowship, Monographic Research on the Systematics of Rhabditidae (Nematoda) and Integrated Student Training in Systematics, January 16, 2000-May 15, 2000; National Science Foundation CAREER Award, IBN-9506844, Genetic and Developmental Mechanisms of a Morphogenetic Program, August 17, 1995-August 16, 2000; Whitehead Fellowship for Junior Faculty in Biomedical or Biological Sciences, Phylogenetic Analysis of Morphogenesis in a Developmental Genetic Model at the Cellular and Ultrastructural Levels, September 1, 1997-August 31, 1999; National Institutes of Health Postdoctoral Fellowship, GM13652, Comparative Genetic Analysis of Nematode Development, February 1, 1990-January 31, 1993. Update your faculty profile

Selected Works:

A phylogeny and molecular barcodes for Caenorhabditis, with numerous new species from rotting fruits.
BMC Evol Biol   (2011)
Kiontke KC, Felix MA, Ailion M, Rockman MV, Braendle C, Penigault JB, Fitch DH
Overlap extension PCR: an efficient method for transgene construction.
Methods Mol Biol   (2011)
Nelson MD, Fitch DH
Evolution
In: Riddle DL, Blumenthal T, Meyer BJ, Priess JR, editors. Evolution 2nd edition. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press; 1997 Chapter 29   (1997)
Fitch DHA, Kelley Thomas W
A bow-tie genetic architecture for morphogenesis suggested by a genome-wide RNAi screen in Caenorhabditis elegans.
PLoS Genet   (2011 Mar)
Nelson MD, Zhou E, Kiontke K, Fradin H, Maldonado G, Martin D, Shah K, Fitch DH
Phenotypic plasticity: different teeth for different feasts.
Curr Biol   (2010 Sep 14)
Kiontke K, Fitch DH
Evolution of early embryogenesis in rhabditid nematodes.
Dev Biol   (2009 Nov 1)
Brauchle M, Kiontke K, MacMenamin P, Fitch DH, Piano F
Dropout alignment allows homology recognition and evolutionary analysis of rDNA intergenic spacers.
J Mol Evol   (2008 Apr)
Ryu S, Do Y, Fitch DH, Kim W, Mishra B
Introduction to nematode evolution and ecology.
WormBook   (2005)
Fitch DH
The phylogenetic relationships of Caenorhabditis and other rhabditids.
WormBook   (2005)
Kiontke K, Fitch DH
Trends, stasis, and drift in the evolution of nematode vulva development.
Curr Biol   (2007 Nov 20)
Kiontke K, Barriere A, Kolotuev I, Podbilewicz B, Sommer R, Fitch DH, Felix MA
Caenorhabditis evolution: if they all look alike, you aren't looking hard enough.
Trends Genet   (2007 Mar)
Haag ES, Chamberlin H, Coghlan A, Fitch DH, Peters AD, Schulenburg H
Novel gain-of-function alleles demonstrate a role for the heterochronic gene lin-41 in C. elegans male tail tip morphogenesis.
Dev Biol   (2006 Sep 1)
Del Rio-Albrechtsen T, Kiontke K, Chiou SY, Fitch DH
Evolution: an ecological context for C. elegans.
Curr Biol   (2005 Sep 6)
Fitch DH
Autosomal genes of autosomal/X-linked duplicated gene pairs and germ-line proliferation in Caenorhabditis elegans.
Genetics   (2005 Apr)
Maciejowski J, Ahn JH, Cipriani PG, Killian DJ, Chaudhary AL, Lee JI, Voutev R, Johnsen RC, Baillie DL, Gunsalus KC, Fitch DH, Hubbard EJ
Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss.
Proc Natl Acad Sci U S A   (2004 Jun 15)
Kiontke K, Gavin NP, Raynes Y, Roehrig C, Piano F, Fitch DH
The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics.
PLoS Biol   (2003 Nov)
Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DH, Fulton LA, Fulton RE, Griffiths-Jones S, Harris TW, Hillier LW, Kamath R, Kuwabara PE, Mardis ER, Marra MA, Miner TL, Minx P, Mullikin JC, Plumb RW, Rogers J, Schein JE, Sohrmann M, Spieth J, Stajich JE, Wei C, Willey D, Wilson RK, Durbin R, Waterston RH
Absence of wolbachia in nonfilariid nematodes.
J Nematol   (2003 Sep)
Bordenstein SR, Fitch DH, Werren JH
One small step for worms, one giant leap for "Bauplan"?
Evol Dev   (2002 Jul-Aug)
Fitch DH, Sudhaus W
TLP-1 is an asymmetric cell fate determinant that responds to Wnt signals and controls male tail tip morphogenesis in C. elegans.
Development   (2002 Mar)
Zhao X, Yang Y, Fitch DH, Herman MA
Evolution of "rhabditidae" and the male tail.
J Nematol   (2000 Sep)
Fitch DH
Morphogenesis of the Caenorhabditis elegans male tail tip.
Dev Biol   (1999 Mar 1)
Nguyen CQ, Hall DH, Yang Y, Fitch DH
Evolution of male tail development in rhabditid nematodes related to Caenorhabditis elegans.
Syst Biol   (1997 Mar)
Fitch DH
Variable cell positions and cell contacts underlie morphological evolution of the rays in the male tails of nematodes related to Caenorhabditis elegans.
Dev Biol   (1995 Aug)
Fitch DH, Emmons SW
18S ribosomal RNA gene phylogeny for some Rhabditidae related to Caenorhabditis.
Mol Biol Evol   (1995 Mar)
Fitch DH, Bugaj-Gaweda B, Emmons SW
Widespread occurrence of the Tc1 transposon family: Tc1-like transposons from teleost fish.
Mol Gen Genet   (1994 Sep 28)
Radice AD, Bugaj B, Fitch DH, Emmons SW
Low codon bias and high rates of synonymous substitution in Drosophila hydei and D. melanogaster histone genes.
Mol Biol Evol   (1993 Mar)
Fitch DH, Strausbaugh LD
Fetal recruitment of anthropoid gamma-globin genes. Findings from phylogenetic analyses involving the 5'-flanking sequences of the psi gamma 1 globin gene of spider monkey Ateles geoffroyi.
J Mol Biol   (1992 Apr 5)
Hayasaka K, Fitch DH, Slightom JL, Goodman M
Pattern formation in the nematode epidermis: determination of the arrangement of peripheral sense organs in the C. elegans male tail.
Development   (1991 Oct)
Baird SE, Fitch DH, Kassem IA, Emmons SW
Duplication of the gamma-globin gene mediated by L1 long interspersed repetitive elements in an early ancestor of simian primates.
Proc Natl Acad Sci U S A   (1991 Aug 15)
Fitch DH, Bailey WJ, Tagle DA, Goodman M, Sieu L, Slightom JL
Phylogenetic scanning: a computer-assisted algorithm for mapping gene conversions and other recombinational events.
Comput Appl Biosci   (1991 Apr)
Fitch DH, Goodman M
Molecular evolution of the psi eta-globin gene locus: gibbon phylogeny and the hominoid slowdown.
Mol Biol Evol   (1991 Mar)
Bailey WJ, Fitch DH, Tagle DA, Czelusniak J, Slightom JL, Goodman M
On the origins of tandemly repeated genes: does histone gene copy number in Drosophila reflect chromosomal location?
Chromosoma   (1990 Apr)
Fitch DH, Strausbaugh LD, Barrett V
Primate evolution at the DNA level and a classification of hominoids.
J Mol Evol   (1990 Mar)
Goodman M, Tagle DA, Fitch DH, Bailey W, Czelusniak J, Koop BF, Benson P, Slightom JL
Molecular history of gene conversions in the primate fetal gamma-globin genes. Nucleotide sequences from the common gibbon, Hylobates lar.
J Biol Chem   (1990 Jan 15)
Fitch DH, Mainone C, Goodman M, Slightom JL
Molecular phylogeny of the family of apes and humans.
Genome   (1989)
Goodman M, Koop BF, Czelusniak J, Fitch DH, Tagle DA, Slightom JL
The spider monkey psi eta-globin gene and surrounding sequences: recent or ancient insertions of LINEs and SINEs?
Genomics   (1988 Oct)
Fitch DH, Mainone C, Slightom JL, Goodman M

 Update your faculty profile

Updated on 05/02/2013